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Jiayuan Ding

Staff Research Scientist
Stanford University,
Hippocratic AI
jiayuandingjsnu@gmail.com


Short Bio

I am currently a Staff Research Scientist at Hippocratic AI and a Visiting Scholar at Stanford University, where I am fortunate to work with Prof. Xiaojie Qiu in the Qiu Lab. I received my Ph.D. in Computer Science from Michigan State University, where I was advised by Prof. Jiliang Tang. Prior to that, I earned my M.S. in Computer Science from the University of Southern California, under the supervision of Prof. Pedro Szekely. I am also the founder of OmicsML, a non-profit organization dedicated to developing open-source computational tools that accelerate scientific discovery through Large Language Models (LLMs) and Generative AI. In addition, I regularly serve as PC member, and reviewers for leading international conferences and journals in machine learning and data science, including NeurIPS, ICML, ICLR, KDD, AISTATS, AAAI, WWW, WSDM, CIKM, and journals such as npj Artificial Intelligence, Genome Biology, Communications Biology, Pattern Recognition, and Patterns.

Research Interest

News

Selected Publications [ Google Scholar ]

* equal contribution,   $ corresponding author

  1. Foundation Model for Single-Cell
    Jiayuan Ding*$, Jianhui Lin*, Shiyu Jiang*, Yixin Wang, Ziyang Miao, Zhaoyu Fang, Jiliang Tang$, Min Li$, Xiaojie Qiu$
    NeurIPS'25

  2. Foundation Model for Single-Cell
    Hongzhi Wen*, Wenzhuo Tang*, Xinnan Dai, Jiayuan Ding, Wei Jin, Yuying Xie, Jiliang Tang
    ICLR'24

  3. Foundation Model for Single-Cell
    Zhaoyu Fang*, Ziyang Miao*, Jianhui Lin, Yuying Xie, Jiliang Tang$, Jiayuan Ding$, Min Li$
    Under review

  4. Software/Platform for Single-Cell
    Jiayuan Ding*$, Renming Liu*, Hongzhi Wen*, Wenzhuo Tang, Zhaoheng Li, Julian Venegas, Runze Su, Dylan Molho, Wei Jin, Yixin Wang, Qiaolin Lu, Lingxiao Li, Wangyang Zuo, Yi Chang, Yuying Xie, Jiliang Tang
    Genome Biology'24

  5. Software/Platform for Single-Cell
    Jiayuan Ding*$, Zhongyu Xing*, Yixin Wang*, Renming Liu, Sheng Liu, Zhi Huang, Wenzhuo Tang, Yuying Xie, James Zou, Xiaojie Qiu, Jian Ma$, Guoxian Yu$, Jiliang Tang$
    Under review


  6. Jiayuan Ding*, Lingxiao Li*, Qiaolin Lu*, Julian Venegas, Yixin Wang, Lidan Wu, Wei Jin, Hongzhi Wen, Renming Liu, Wenzhuo Tang, Zhaoheng Li, Wangyang Zuo, Yi Chang, Yu Leo Lei, Patrick Danaher$, Yuying Xie$, Jiliang Tang$
    Journal of Computational Biology'24

  7. Jiayuan Ding*, Hongzhi Wen*, Wei Jin*, Yiqi Wang, Yuying Xie, Jiliang Tang
    KDD'21

  8. Jiayuan Ding*, Yixin Wang*, Lidan Wu, Aster Wardhani, Patrick Danaher, Wenzhuo Tang, Hongzhi Wen, Qiaolin Lu, Yi Chang, Yu Leo Lei, Jiliang Tang, Yuying Xie
    BIOKDD'25

  9. Services

    Program Committee Members & Conference Reviewers

    2026: ICLR, WWW, WSDM, AISTATS
    2025: ICML, NeurIPS, KDD, AISTATS, WSDM
    2024: ICML, NeurIPS, ICLR, KDD, WSDM, AAAI, CIKM
    2023: ICML, NeurIPS, KDD, WSDM, AAAI, CIKM
    2022: NeurIPS, CIKM
    2021: CIKM

    External Reviewers

    ICDM'2023, ICLR'2023, AAAI'2022, WSDM'2022, ICML'2022, ICML'2021, NeurIPS'2021

    Journal Reviewers

    npj Artificial Intelligence, Genome Biology, Communications Biology, Pattern Recognition, Patterns, Cell Press

    Conference Volunteers

    KDD'2021, ICML'2021

    Area Chair

    NeurIPS'2025 – AI4Science

    Awards

    Engineering Distinguished Scholar, MSU, 2025
    Engineering Distinguished Scholar, MSU, 2024
    NeurIPS 2022 Competition: Multimodal Single-Cell Integration Across Time, Individuals, and Batches - Silver Medal in Kaggle, Top 2% ≈ 24/1266, 2022
    NeurIPS 2021 Competition: Multimodal Single-Cell Data Integration, 1st Place, 2021
    Excellent Graduation Paper (top 2.5%), 2015
    Jiangsu Provincial Government Scholarship (top 2%), 2014
    Outstanding Student Leader (top 5%), 2014
    Jingwen Zhu Scholarship (top 2%), 2014
    National Scholarship, Ministry of Education of the People's Republic of China (top 0.3%), 2014
    National Scholarship, Ministry of Education of the People's Republic of China (top 0.3%), 2013
    First-class Scholarship (top 5%), 2014
    First-class Scholarship (top 5%), 2013

    Contact


    Email: jiayuandingjsnu (at) gmail.com